diff --git a/test/e2e/suite/conformance/certificates/acme/acme.go b/test/e2e/suite/conformance/certificates/acme/acme.go
index 532f1ae6e..e1d155b32 100644
--- a/test/e2e/suite/conformance/certificates/acme/acme.go
+++ b/test/e2e/suite/conformance/certificates/acme/acme.go
@@ -99,6 +99,11 @@ func (a *acmeIssuerProvisioner) delete(f *framework.Framework, ref cmmeta.Object
 		Expect(a.cloudflare.Deprovision()).NotTo(HaveOccurred(), "failed to deprovision cloudflare")
 	}
 	Expect(a.tiller.Deprovision()).NotTo(HaveOccurred(), "failed to deprovision tiller")
+
+	if ref.Kind == "ClusterIssuer" {
+		err := f.CertManagerClientSet.CertmanagerV1alpha2().ClusterIssuers().Delete(ref.Name, nil)
+		Expect(err).NotTo(HaveOccurred())
+	}
 }
 
 // createXXX will deploy the required components to run an ACME issuer based test.
diff --git a/test/e2e/suite/conformance/certificates/ca/ca.go b/test/e2e/suite/conformance/certificates/ca/ca.go
index fe316a48e..57574ae8b 100644
--- a/test/e2e/suite/conformance/certificates/ca/ca.go
+++ b/test/e2e/suite/conformance/certificates/ca/ca.go
@@ -38,13 +38,14 @@ var _ = framework.ConformanceDescribe("Certificates", func() {
 	(&certificates.Suite{
 		Name:             "CA ClusterIssuer",
 		CreateIssuerFunc: createCAClusterIssuer,
+		DeleteIssuerFunc: deleteCAClusterIssuer,
 	}).Define()
 })
 
 func createCAIssuer(f *framework.Framework) cmmeta.ObjectReference {
 	By("Creating a CA Issuer")
 
-	rootCertSecret, err := f.KubeClientSet.CoreV1().Secrets(f.Namespace.Name).Create(newSigningKeypairSecret("root-cert"))
+	rootCertSecret, err := f.KubeClientSet.CoreV1().Secrets(f.Namespace.Name).Create(newSigningKeypairSecret("root-ca-cert"))
 	Expect(err).NotTo(HaveOccurred(), "failed to create root signing keypair secret")
 
 	issuer, err := f.CertManagerClientSet.CertmanagerV1alpha2().Issuers(f.Namespace.Name).Create(&cmapi.Issuer{
@@ -66,7 +67,7 @@ func createCAIssuer(f *framework.Framework) cmmeta.ObjectReference {
 func createCAClusterIssuer(f *framework.Framework) cmmeta.ObjectReference {
 	By("Creating a CA ClusterIssuer")
 
-	rootCertSecret, err := f.KubeClientSet.CoreV1().Secrets(addon.CertManager.Namespace).Create(newSigningKeypairSecret("root-cert"))
+	rootCertSecret, err := f.KubeClientSet.CoreV1().Secrets(addon.CertManager.Namespace).Create(newSigningKeypairSecret("root-ca-cert"))
 	Expect(err).NotTo(HaveOccurred(), "failed to create root signing keypair secret")
 
 	issuer, err := f.CertManagerClientSet.CertmanagerV1alpha2().ClusterIssuers().Create(&cmapi.ClusterIssuer{
@@ -85,6 +86,16 @@ func createCAClusterIssuer(f *framework.Framework) cmmeta.ObjectReference {
 	}
 }
 
+func deleteCAClusterIssuer(f *framework.Framework, issuer cmmeta.ObjectReference) {
+	By("Deleting CA ClusterIssuer")
+
+	err := f.KubeClientSet.CoreV1().Secrets(addon.CertManager.Namespace).Delete("root-ca-cert", nil)
+	Expect(err).NotTo(HaveOccurred(), "failed to delete root signing keypair secret")
+
+	err = f.CertManagerClientSet.CertmanagerV1alpha2().ClusterIssuers().Delete(issuer.Name, nil)
+	Expect(err).NotTo(HaveOccurred(), "failed to delete ca issuer")
+}
+
 func createCAIssuerSpec(rootCertSecretName string) cmapi.IssuerSpec {
 	return cmapi.IssuerSpec{
 		IssuerConfig: cmapi.IssuerConfig{
diff --git a/test/e2e/suite/conformance/certificates/selfsigned/selfsigned.go b/test/e2e/suite/conformance/certificates/selfsigned/selfsigned.go
index 8ed86079b..1c3de1332 100644
--- a/test/e2e/suite/conformance/certificates/selfsigned/selfsigned.go
+++ b/test/e2e/suite/conformance/certificates/selfsigned/selfsigned.go
@@ -36,6 +36,7 @@ var _ = framework.ConformanceDescribe("Certificates", func() {
 	(&certificates.Suite{
 		Name:             "SelfSigned ClusterIssuer",
 		CreateIssuerFunc: createSelfSignedClusterIssuer,
+		DeleteIssuerFunc: deleteSelfSignedClusterIssuer,
 	}).Define()
 })
 
@@ -57,10 +58,15 @@ func createSelfSignedIssuer(f *framework.Framework) cmmeta.ObjectReference {
 	}
 }
 
+func deleteSelfSignedClusterIssuer(f *framework.Framework, issuer cmmeta.ObjectReference) {
+	err := f.CertManagerClientSet.CertmanagerV1alpha2().ClusterIssuers().Delete(issuer.Name, nil)
+	Expect(err).NotTo(HaveOccurred())
+}
+
 func createSelfSignedClusterIssuer(f *framework.Framework) cmmeta.ObjectReference {
 	By("Creating a SelfSigned ClusterIssuer")
 
-	_, err := f.CertManagerClientSet.CertmanagerV1alpha2().Issuers(f.Namespace.Name).Create(&cmapi.Issuer{
+	_, err := f.CertManagerClientSet.CertmanagerV1alpha2().ClusterIssuers().Create(&cmapi.ClusterIssuer{
 		ObjectMeta: metav1.ObjectMeta{
 			Name: "selfsigned",
 		},
diff --git a/test/e2e/suite/conformance/certificates/vault/vault_approle.go b/test/e2e/suite/conformance/certificates/vault/vault_approle.go
index a7069e163..c17328d28 100644
--- a/test/e2e/suite/conformance/certificates/vault/vault_approle.go
+++ b/test/e2e/suite/conformance/certificates/vault/vault_approle.go
@@ -76,6 +76,14 @@ func (v *vaultAppRoleProvisioner) delete(f *framework.Framework, ref cmmeta.Obje
 	Expect(v.vaultInit.Clean()).NotTo(HaveOccurred(), "failed to deprovision vault initializer")
 	Expect(v.vault.Deprovision()).NotTo(HaveOccurred(), "failed to deprovision vault")
 	Expect(v.tiller.Deprovision()).NotTo(HaveOccurred(), "failed to deprovision tiller")
+
+	if ref.Kind == "ClusterIssuer" {
+		err := f.CertManagerClientSet.CertmanagerV1alpha2().ClusterIssuers().Delete(ref.Name, nil)
+		Expect(err).NotTo(HaveOccurred())
+
+		err = f.KubeClientSet.CoreV1().Secrets(addon.CertManager.Namespace).Delete(vaultSecretAppRoleName, nil)
+		Expect(err).NotTo(HaveOccurred())
+	}
 }
 
 func (v *vaultAppRoleProvisioner) createIssuer(f *framework.Framework) cmmeta.ObjectReference {
diff --git a/test/e2e/suite/conformance/certificates/venafi/venafi.go b/test/e2e/suite/conformance/certificates/venafi/venafi.go
index b25697c1a..3f3cbf483 100644
--- a/test/e2e/suite/conformance/certificates/venafi/venafi.go
+++ b/test/e2e/suite/conformance/certificates/venafi/venafi.go
@@ -62,6 +62,11 @@ type venafiProvisioner struct {
 
 func (v *venafiProvisioner) delete(f *framework.Framework, ref cmmeta.ObjectReference) {
 	Expect(v.tpp.Deprovision()).NotTo(HaveOccurred(), "failed to deprovision tpp venafi")
+
+	if ref.Kind == "ClusterIssuer" {
+		err := f.CertManagerClientSet.CertmanagerV1alpha2().ClusterIssuers().Delete(ref.Name, nil)
+		Expect(err).NotTo(HaveOccurred())
+	}
 }
 
 func (v *venafiProvisioner) createIssuer(f *framework.Framework) cmmeta.ObjectReference {